Abstract
In the mechanism of retaining β-glycosidases, the 2-hydroxyl group of the substrate in the monosaccharyl unit involved in catalysis (subsite - 1) is believed to play an important role through hydrogen bonding interactions with protein residues that are optimized at the transition state. Commonly, removal of the 2-OH group of the substrate results in a 10-12 kcal.mol-1 transition state destabilization. However, this effect seems not to be general as reported here for Bacillus 1,3-1,4-β-glucanase, a family 16 retaining endo-glycosidase. A p-nitrophenyl 2-deoxy tetrasaccharide substrate was synthesized to probe the involvement of the 2-OH group in catalysis. Comparative kinetics with wild-type and subsite +1 mutants show that the 2-deoxy analog is a better substrate than the corresponding 2-hydroxy substrate. It is tentatively proposed that the 2-deoxy analog adopts a different conformation upon binding that compensates for the lack of the 2-OH substituent.
| Original language | English |
|---|---|
| Pages (from-to) | 223-231 |
| Number of pages | 9 |
| Journal | Biocatalysis and Biotransformation |
| Volume | 21 |
| Issue number | 4-5 |
| DOIs | |
| Publication status | Published - Aug 2003 |
| Event | 5th Carbohydrate Bioengineering Meeting - GRONINGEN, Netherlands Duration: 6 Apr 2003 → 9 Apr 2003 |
Keywords
- 2-deoxyglycoside
- Glycosidase
- Mechanism
- Non-covalent interactions
- Ring distortion
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