TY - JOUR
T1 - Unusual role of the 2-OH group of oligosaccharide substrates in the mechanism of Bacillus 1,3-1,4-β-glucanase
AU - Planas, Antoni
AU - Nieto, Juan
AU - Abel, Mireia
AU - Segade, Antoni
PY - 2003/8
Y1 - 2003/8
N2 - In the mechanism of retaining β-glycosidases, the 2-hydroxyl group of the substrate in the monosaccharyl unit involved in catalysis (subsite - 1) is believed to play an important role through hydrogen bonding interactions with protein residues that are optimized at the transition state. Commonly, removal of the 2-OH group of the substrate results in a 10-12 kcal.mol-1 transition state destabilization. However, this effect seems not to be general as reported here for Bacillus 1,3-1,4-β-glucanase, a family 16 retaining endo-glycosidase. A p-nitrophenyl 2-deoxy tetrasaccharide substrate was synthesized to probe the involvement of the 2-OH group in catalysis. Comparative kinetics with wild-type and subsite +1 mutants show that the 2-deoxy analog is a better substrate than the corresponding 2-hydroxy substrate. It is tentatively proposed that the 2-deoxy analog adopts a different conformation upon binding that compensates for the lack of the 2-OH substituent.
AB - In the mechanism of retaining β-glycosidases, the 2-hydroxyl group of the substrate in the monosaccharyl unit involved in catalysis (subsite - 1) is believed to play an important role through hydrogen bonding interactions with protein residues that are optimized at the transition state. Commonly, removal of the 2-OH group of the substrate results in a 10-12 kcal.mol-1 transition state destabilization. However, this effect seems not to be general as reported here for Bacillus 1,3-1,4-β-glucanase, a family 16 retaining endo-glycosidase. A p-nitrophenyl 2-deoxy tetrasaccharide substrate was synthesized to probe the involvement of the 2-OH group in catalysis. Comparative kinetics with wild-type and subsite +1 mutants show that the 2-deoxy analog is a better substrate than the corresponding 2-hydroxy substrate. It is tentatively proposed that the 2-deoxy analog adopts a different conformation upon binding that compensates for the lack of the 2-OH substituent.
KW - 2-deoxyglycoside
KW - Glycosidase
KW - Mechanism
KW - Non-covalent interactions
KW - Ring distortion
UR - http://www.scopus.com/inward/record.url?scp=0347337761&partnerID=8YFLogxK
UR - https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=pure_univeritat_ramon_llull&SrcAuth=WosAPI&KeyUT=WOS:000187032500011&DestLinkType=FullRecord&DestApp=WOS
U2 - 10.1080/10242420310001618500
DO - 10.1080/10242420310001618500
M3 - Article
AN - SCOPUS:0347337761
SN - 1024-2422
VL - 21
SP - 223
EP - 231
JO - Biocatalysis and Biotransformation
JF - Biocatalysis and Biotransformation
IS - 4-5
T2 - 5th Carbohydrate Bioengineering Meeting
Y2 - 6 April 2003 through 9 April 2003
ER -