Theoretical determination of the solvation free energy in water and chloroform of the nucleic acid bases

Modesto Orozco; Carles Colominas; Francisco J. Luque

doi:10.1016/0301-0104(96)00112-7

Theoretical determination of the solvation free energy in water and chloroform of the nucleic acid bases

Modesto Orozco^*
, Carles Colominas
, Francisco J. Luque

^*Autor corresponent d’aquest treball

Producció científica: Article en revista indexada › Article › Avaluat per experts

39 Cites (Scopus)

Resum

The free energy of solvation in H₂O and CHCl₃ of the N-methyl derivatives of the five nucleic acid bases has been determined from self-consistent reaction field (SCRF) calculations and free energy perturbation (FEP) simulations. Theoretical estimates of the respective water/chloroform partition coefficients (log P) were determined from the solvation free energies in the two solvents. Comparison of the results with experimental data suggests a reliable estimation of the free energies of solvation for the nucleic acid bases.

Idioma original	Anglès
Pàgines (de-a)	19-29
Nombre de pàgines	11
Revista	Chemical Physics
Volum	209
Número	1
DOIs	https://doi.org/10.1016/0301-0104(96)00112-7
Estat de la publicació	Publicada - 1 de set. 1996
Publicat externament	Sí

Accés al document

10.1016/0301-0104(96)00112-7

Altres arxius i enllaços

Com citar-ho

@article{4fe1eab1a3a64be4a99047f02b047b8e,

title = "Theoretical determination of the solvation free energy in water and chloroform of the nucleic acid bases",

abstract = "The free energy of solvation in H2O and CHCl3 of the N-methyl derivatives of the five nucleic acid bases has been determined from self-consistent reaction field (SCRF) calculations and free energy perturbation (FEP) simulations. Theoretical estimates of the respective water/chloroform partition coefficients (log P) were determined from the solvation free energies in the two solvents. Comparison of the results with experimental data suggests a reliable estimation of the free energies of solvation for the nucleic acid bases.",

keywords = "Hydration free-energies, Mst-scrf calculations, Aqueous-solution, Electrostatic interaction, Partition-coefficients, Neutral molecules, Nucleotide bases, Continuum model, Organic solutes, Solvent",

author = "Modesto Orozco and Carles Colominas and Luque, \{Francisco J.\}",

note = "Funding Information: modified to perform this work, and to Dr. W.L. Jorgensen for a copy of BOSS3.4 computer program. This work was supported by the Centre de Super-computaci6 de Catalunya (CESCA, Mol. Recog. Project) and by the Spanish DGICYT (PB93-0779 and PB94-0940). We thank R. Rycroft for helpful assistance in the preparation of the manuscript.",

year = "1996",

month = sep,

day = "1",

doi = "10.1016/0301-0104(96)00112-7",

language = "English",

volume = "209",

pages = "19--29",

journal = "Chemical Physics",

issn = "0301-0104",

publisher = "Elsevier B.V.",

number = "1",

}

TY - JOUR

T1 - Theoretical determination of the solvation free energy in water and chloroform of the nucleic acid bases

AU - Orozco, Modesto

AU - Colominas, Carles

AU - Luque, Francisco J.

N1 - Funding Information: modified to perform this work, and to Dr. W.L. Jorgensen for a copy of BOSS3.4 computer program. This work was supported by the Centre de Super-computaci6 de Catalunya (CESCA, Mol. Recog. Project) and by the Spanish DGICYT (PB93-0779 and PB94-0940). We thank R. Rycroft for helpful assistance in the preparation of the manuscript.

PY - 1996/9/1

Y1 - 1996/9/1

N2 - The free energy of solvation in H2O and CHCl3 of the N-methyl derivatives of the five nucleic acid bases has been determined from self-consistent reaction field (SCRF) calculations and free energy perturbation (FEP) simulations. Theoretical estimates of the respective water/chloroform partition coefficients (log P) were determined from the solvation free energies in the two solvents. Comparison of the results with experimental data suggests a reliable estimation of the free energies of solvation for the nucleic acid bases.

AB - The free energy of solvation in H2O and CHCl3 of the N-methyl derivatives of the five nucleic acid bases has been determined from self-consistent reaction field (SCRF) calculations and free energy perturbation (FEP) simulations. Theoretical estimates of the respective water/chloroform partition coefficients (log P) were determined from the solvation free energies in the two solvents. Comparison of the results with experimental data suggests a reliable estimation of the free energies of solvation for the nucleic acid bases.

KW - Hydration free-energies

KW - Mst-scrf calculations

KW - Aqueous-solution

KW - Electrostatic interaction

KW - Partition-coefficients

KW - Neutral molecules

KW - Nucleotide bases

KW - Continuum model

KW - Organic solutes

KW - Solvent

UR - https://www.scopus.com/pages/publications/84962406892

UR - https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=pure_univeritat_ramon_llull&SrcAuth=WosAPI&KeyUT=WOS:A1996VE52100003&DestLinkType=FullRecord&DestApp=WOS_CPL

U2 - 10.1016/0301-0104(96)00112-7

DO - 10.1016/0301-0104(96)00112-7

M3 - Article

AN - SCOPUS:84962406892

SN - 0301-0104

VL - 209

SP - 19

EP - 29

JO - Chemical Physics

JF - Chemical Physics

IS - 1

ER -

Theoretical determination of the solvation free energy in water and chloroform of the nucleic acid bases

Resum

Accés al document

Altres arxius i enllaços

Fingerprint

Com citar-ho