TY - JOUR
T1 - Structure matters
T2 - Assessing the statistical significance of network topologies
AU - Salbanya Rovira, Bernat
AU - Carrasco-Farré, Carlos
AU - Nin, Jordi
N1 - Publisher Copyright:
© 2024 Salbanya et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
PY - 2024/10/2
Y1 - 2024/10/2
N2 - Network analysis has found widespread utility in many research areas. However, assessing the statistical significance of observed relationships within networks remains a complex challenge. Traditional node permutation tests are often insufficient in capturing the effect of changing network topology by creating reliable null distributions. We propose two randomization alternatives to address this gap: random rewiring and controlled rewiring. These methods incorporate changes in the network topology through edge swaps. However, controlled rewiring allows for more nuanced alterations of the original network than random rewiring. In this sense, this paper introduces a novel evaluation tool, the Expanded Quadratic Assignment Procedure (EQAP), designed to calculate a specific p-value and interpret statistical tests with enhanced precision. The combination of EQAP and controlled rewiring provides a robust network comparison and statistical analysis framework. The methodology is exemplified through two real-world examples: the analysis of an organizational network structure, illustrated by the Enron-Email dataset, and a social network case, represented by the UK Faculty friendship network. The utility of these statistical tests is underscored by their capacity to safeguard researchers against Type I errors when exploring network metrics dependent on intricate topologies.
AB - Network analysis has found widespread utility in many research areas. However, assessing the statistical significance of observed relationships within networks remains a complex challenge. Traditional node permutation tests are often insufficient in capturing the effect of changing network topology by creating reliable null distributions. We propose two randomization alternatives to address this gap: random rewiring and controlled rewiring. These methods incorporate changes in the network topology through edge swaps. However, controlled rewiring allows for more nuanced alterations of the original network than random rewiring. In this sense, this paper introduces a novel evaluation tool, the Expanded Quadratic Assignment Procedure (EQAP), designed to calculate a specific p-value and interpret statistical tests with enhanced precision. The combination of EQAP and controlled rewiring provides a robust network comparison and statistical analysis framework. The methodology is exemplified through two real-world examples: the analysis of an organizational network structure, illustrated by the Enron-Email dataset, and a social network case, represented by the UK Faculty friendship network. The utility of these statistical tests is underscored by their capacity to safeguard researchers against Type I errors when exploring network metrics dependent on intricate topologies.
KW - Centrality
KW - Distributions
KW - Models
KW - Regression
KW - Scale-free
UR - http://www.scopus.com/inward/record.url?scp=85205528266&partnerID=8YFLogxK
U2 - 10.1371/journal.pone.0309005
DO - 10.1371/journal.pone.0309005
M3 - Article
C2 - 39356706
AN - SCOPUS:85205528266
SN - 1932-6203
VL - 19
SP - e0309005
JO - PLOS ONE
JF - PLOS ONE
IS - 10
M1 - e0309005
ER -